Publications#

Cell Systems
Machine learning optimization of candidate antibody yields highly diverse sub-nanomolar affinity antibody libraries

Lin Li, Esther Gupta, John Spaeth, Leslie Shing, Rafael Jaimes, Emily Engelhart, Randolph Lopez, Rajmonda S. Caceres, Tristan Bepler and Matthew E. Walsh
Nature Communications 2023
Cell Systems
PoET: A generative model of protein families as sequences-of-sequences

Timothy F. Truong Jr, Tristan Bepler
NeurIPS 2023

Cell Systems
Learning the protein language: Evolution, structure, and function

Tristan Bepler, Bonnie Berger
Cell Systems 2021

Cell Systems
Learning protein sequence embeddings using information from structure

Tristan Bepler, Bonnie Berger
ICLR 2019